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ResultsWe introduce RuleBender, a novel visualization system for the integrated visualization, modeling and simulation of rule-based intracellular biochemistry. Skip to search form Skip to main content. Sekar , James R. Sekar , James R. Skip to search form Skip to main content. An introduction to rule-based modeling of immune receptor signaling John A.

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SekarJames R. HancockTamara Munzner.

SneddonJames R. References Publications referenced by this paper. ResultsWe introduce RuleBender, a novel visualization system for the integrated visualization, modeling and simulation of rulevender intracellular biochemistry.

HoardLydia Tapia. HoffmanJinwook Seo. WenskovitchLeonard A. An introduction to rule-based modeling of immune receptor signaling John A.

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RuleBender:

Ruebender in model construction, visualization rulfbender simulation John A. SekarJames R. By clicking accept or continuing to use the site, you agree to the terms outlined in our Privacy PolicyTerms of Serviceand Dataset License. Simulation of large-scale rule-based models Joshua ColvinMichael I. Rule-based modeling of cell signaling: However, novel visual tools are needed in order to make RBM accessible to a broad range of users, to make specification of models less error prone, and to improve workflows.

Citations Publications citing this paper. HlavacekJames R. HancockTamara Munzner.

John Wenskovitch

FaederThierry Emonet. HlavacekJames R. Rule-based modeling of cell signaling: The support of RBM creation, debugging, and interactive visualization expedites the RBM learning process and reduces model construction time; while built-in model simulation and analysis with multiple linked views streamline the execution and analysis of newly created models and generated networks. Index Terms—computational biology, cell signaling, rule-based modeling and simulation, visualization, interaction, bubble sets.

RuleBender | Biological Visualisation Community

Efficient modeling, simulation and coarse-graining of rulebendee complexity with NFsim Michael W. SneddonJames R. Extending rule-based methods to model molecular geometry Brittany R. Abstract Rule-based modeling RBM is a powerful and increasingly popular approach to modeling cell signaling networks.

References Publications referenced by this paper. Abstract—We introduce RuleBender, a novel visualization system for the integrated visualization, modeling and simulation of rulebased intracellular biochemistry.

RuleBender – John Wenskovitch

Advances in model construction, visualization and simulation John A. Rule-based modeling RBM is a powerful and increasingly popular approach to modeling cell signaling networks.

RuleBender has been adopted as both an educational and a research tool and is available as a free open source tool at http: CitePeer Related Articles http: We introduce RuleBender, a novel visualization system for the integrated visualization, modeling and simulation of rule-based intracellular biochemistry. Skip to search form Skip to main content. Europe PMC requires Javascript to function effectively.